Question: I am very concerned as I am a catholic and was wondering if our Lord meant that my church is Babylon and to leave the church, because of all the scandal that it has been going through lately. do you think I have reason to be concerned?
Answer: There have been Protestant interpreters who have identified Babylon with the Catholic Church in the past and probably some who still do, but I find this interpretation very questionable. It is designated as a city, and though it is said to sit on seven hills in some translations (as Rome does), if the word here means mountains instead that would not apply to Rome. If mountains is intended it would be symbolic rather than strictly geographical, mountains representing places of power and authority. Babylon would be in control of seven kingdoms in this interpretation.
I think the best reason to leave the Catholic Church would not be for the scandals of late. Every human organization will have fallen human beings doing bad things that need to be dealt with. That is why Jesus taught a way of dealing with sin in the church in Matthew 18:15-20. The reason you should leave it is if it is in disagreement with the clear teaching of Scripture. Protestants have had problems in this arena with the fact that the Catholic Church, in our opinion, has obscured the gospel and the way of salvation, making it seem too much like it depends on our works to get us to heaven rather than the finished sacrifice of Christ. Martin Luther’s concern was that the Bible teaches justification (being declared righteous before God) by faith alone.
Protestants have also disagreed with vesting authority in one man in the church, and even with the councils of the church, as they can be fallible and it would seem to have indeed failed to preserve the teaching of Scripture. We see Scripture as our final authority, though we value the tradition of the church as a help to correct interpretation of Scripture.
Do you know that you have a saving relationship with Jesus Christ? Are you being taught in your faith to grow in grace and becoming more Christlike in your life? Is the church helping or hindering this process? Can you learn from both sides of the aisle? Do you really give allegiance to the Pope? These are the kinds of questions I believe are most important to answer in this consideration.